| 26 Feb 21 | r01        | Dandenong Thunder SCDandenong Thu | 1 - 1 | Dandenong City SCDandenong Cit |
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| 05 Mar 21 | r02        | Melbourne KnightsMelbourne Kni | 2 - 1 | Dandenong Thunder SCDandenong Thu |
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| 12 Mar 21 | r03        | Dandenong Thunder SCDandenong Thu | 1 - 2 | Bentleigh Greens SCBentleigh Gre |
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| 21 Mar 21 | r04        | Eastern Lions SCEastern Lions | 1 - 2 | Dandenong Thunder SCDandenong Thu |
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| 27 Mar 21 | r05        | Dandenong Thunder SCDandenong Thu | 1 - 1 | Port Melbourne SCPort Melbourn |
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| 31 Mar 21 | r06        | South Melbourne FCSouth Melbour | 1 - 0 | Dandenong Thunder SCDandenong Thu |
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| 10 Apr 21 | r07        | Dandenong Thunder SCDandenong Thu | 1 - 0 | St Albans Saints SCSt Albans Sai |
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| 17 Apr 21 | r08        | Dandenong Thunder SCDandenong Thu | 4 - 3 | Hume City FCHume City FC |
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| 24 Apr 21 | r09        | Avondale FCAvondale FC | 2 - 1 | Dandenong Thunder SCDandenong Thu |
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| 01 May 21 | r10        | Dandenong Thunder SCDandenong Thu | 1 - 2 | Heidelberg United FCHeidelberg Un |
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| 09 May 21 | r11        | Oakleigh Cannons FCOakleigh Cann | 3 - 2 | Dandenong Thunder SCDandenong Thu |
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| 15 May 21 | r12        | Dandenong Thunder SCDandenong Thu | 3 - 1 | Altona Magic SCAltona Magic |
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| 21 May 21 | r13        | Green Gully SCGreen Gully S | 2 - 2 | Dandenong Thunder SCDandenong Thu |
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| 19 Jun 21 | r17        | Dandenong Thunder SCDandenong Thu | 2 - 1 | Eastern Lions SCEastern Lions |
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| 25 Jun 21 | r18        | Port Melbourne SCPort Melbourn | 2 - 2 | Dandenong Thunder SCDandenong Thu |
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| 03 Jul 21 | r19        | Dandenong Thunder SCDandenong Thu | 4 - 1 | South Melbourne FCSouth Melbour |
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| 11 Jul 21 | r20        | St Albans Saints SCSt Albans Sai | 0 - 1 | Dandenong Thunder SCDandenong Thu |
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| 17 Jul 21 | r21        | Hume City FCHume City FC | - | Dandenong Thunder SCDandenong Thu |
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| 24 Jul 21 | r22        | Dandenong Thunder SCDandenong Thu | - | Avondale FCAvondale FC |
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| 01 Aug 21 | r23        | Heidelberg United FCHeidelberg Un | 0 - 1 | Dandenong Thunder SCDandenong Thu |
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| 07 Aug 21 | r24        | Dandenong Thunder SCDandenong Thu | - | Oakleigh Cannons FCOakleigh Cann |
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| 13 Aug 21 | r14        | Dandenong City SCDandenong Cit | - | Dandenong Thunder SCDandenong Thu |
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| 21 Aug 21 | r25        | Altona Magic SCAltona Magic | - | Dandenong Thunder SCDandenong Thu |
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| 29 Aug 21 | r26        | Dandenong Thunder SCDandenong Thu | - | Green Gully SCGreen Gully S |
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| 04 Sep 21 | r15        | Dandenong Thunder SCDandenong Thu | - | Melbourne KnightsMelbourne Kni |
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| 12 Sep 21 | r16        | Bentleigh Greens SCBentleigh Gre | - | Dandenong Thunder SCDandenong Thu |